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Proceedings of the 17th Python in Science Conference

SciPy 2018, Austin, Texas July 9 - July 15

Accepted Papers

Dynamic Social Network Modeling of Diffuse Subcellular Morphologies

Andrew Durden, Allyson Loy, Barbara Reaves, Mojtaba Fazli, Abigail Courtney, Frederick Quinn, S Chennubhotla, Shannon Quinn

doi: 10.25080/Majora-4af1f417-000, pages: 1-7

Cloudknot: A Python Library to Run your Existing Code on AWS Batch

Adam Richie-Halford, Ariel Rokem

doi: 10.25080/Majora-4af1f417-001, pages: 8-14

Equity, Scalability, and Sustainability of Data Science Infrastructure

Anthony Suen, Laura Norén, Alan Liang, Andrea Tu

doi: 10.25080/Majora-4af1f417-002, pages: 15-17

Composable Multi-Threading and Multi-Processing for Numeric Libraries

Anton Malakhov, David Liu, Anton Gorshkov, Terry Wilmarth

doi: 10.25080/Majora-4af1f417-003, pages: 18-24

The Econ-ARK and HARK: Open Source Tools for Computational Economics

Christopher Carroll, Alexander Kaufman, Jacqueline Kazil, Nathan Palmer, Matthew White

doi: 10.25080/Majora-4af1f417-004, pages: 25-30

Developing a Start-to-Finish Pipeline for Accelerometer-Based Activity Recognition Using Long Short-Term Memory Recurrent Neural Networks

Christian McDaniel, Shannon Quinn

doi: 10.25080/Majora-4af1f417-005, pages: 31-40

Practical Applications of Astropy

David Shupe, Frank Masci, Russ Laher, Ben Rusholme, Lee Armus

doi: 10.25080/Majora-4af1f417-006, pages: 41-47

EarthSim: Flexible Environmental Simulation Workflows Entirely Within Jupyter Notebooks

Dharhas Pothina, Philipp Rudiger, James Bednar, Scott Christensen, Kevin Winters, Kimberly Pevey, Christopher Ball, Gregory Brener

doi: 10.25080/Majora-4af1f417-007, pages: 48-55

Safe handling instructions for missing data

Dillon Niederhut

doi: 10.25080/Majora-4af1f417-008, pages: 56-60

Text and data mining scientific articles with allofplos

Elizabeth Seiver, M Pacer, Sebastian Bassi

doi: 10.25080/Majora-4af1f417-009, pages: 61-64

Sparse: A more modern sparse array library

Hameer Abbasi

doi: 10.25080/Majora-4af1f417-00a, pages: 65-68

Bringing ipywidgets Support to plotly.py

Jon Mease

doi: 10.25080/Majora-4af1f417-00b, pages: 69-76

WrightSim: Using PyCUDA to Simulate Multidimensional Spectra

Kyle Sunden, Blaise Thompson, John Wright

doi: 10.25080/Majora-4af1f417-00c, pages: 77-83

Exploring the Extended Kalman Filter for GPS Positioning Using Simulated User and Satellite Track Data

Mark Wickert, Chiranth Siddappa

doi: 10.25080/Majora-4af1f417-00d, pages: 84-90

Real-Time Digital Signal Processing Using pyaudio_helper and the ipywidgets

Mark Wickert

doi: 10.25080/Majora-4af1f417-00e, pages: 91-98

Organic Molecules in Space: Insights from the NASA Ames Molecular Database in the era of the James Webb Space Telescope

Matthew Shannon, Christiaan Boersma

doi: 10.25080/Majora-4af1f417-00f, pages: 99-105

Harnessing the Power of Scientific Python to Investigate Biogeochemistry and Metaproteomes of the Central Pacific Ocean

Noelle Held, Jaclyn Saunders, Joe Futrelle, Mak Saito

doi: 10.25080/Majora-4af1f417-010, pages: 106-112

Binder 2.0 - Reproducible, interactive, sharable environments for science at scale

Project Jupyter, Matthias Bussonnier, Jessica Forde, Jeremy Freeman, Brian Granger, Tim Head, Chris Holdgraf, Kyle Kelley, Gladys Nalvarte, Andrew Osheroff, M Pacer, Yuvi Panda, Fernando Perez, Benjamin Ragan-Kelley, Carol Willing

doi: 10.25080/Majora-4af1f417-011, pages: 113-120

Spatio-temporal analysis of socioeconomic neighborhoods: The Open Source Longitudinal Neighborhood Analysis Package (OSLNAP)

Sergio Rey, Elijah Knaap, Su Han, Levi Wolf, Wei Kang

doi: 10.25080/Majora-4af1f417-012, pages: 121-128

Design and Implementation of pyPRISM: A Polymer Liquid-State Theory Framework

Tyler Martin, Thomas Gartner, Ronald Jones, Chad Snyder, Arthi Jayaraman

doi: 10.25080/Majora-4af1f417-013, pages: 129-136

A Bayesian’s journey to a better research workflow

Konstantinos Vamvourellis, Marianne Corvellec

doi: 10.25080/Majora-4af1f417-014, pages: 137-144

Scalable Feature Extraction with Aerial and Satellite Imagery

Virginia Ng, Daniel Hofmann

doi: 10.25080/Majora-4af1f417-015, pages: 145-151

signac: A Python framework for data and workflow management

Vyas Ramasubramani, Carl Adorf, Paul Dodd, Bradley Dice, Sharon Glotzer

doi: 10.25080/Majora-4af1f417-016, pages: 152-159

Yaksh: Facilitating Learning by Doing

Prabhu Ramachandran, Prathamesh Salunke, Ankit Javalkar, Aditya Palaparthy, Mahesh Gudi, Hardik Ghaghada

doi: 10.25080/Majora-4af1f417-017, pages: 160-167