Proceedings of the 21st Python in Science Conference
Accepted Papers¶
The Advanced Scientific Data Format (ASDF): An Update
Perry Greenfield, Edward Slavich, William Jamieson, Nadia Dencheva
Semi-Supervised Semantic Annotator (S3A): Toward Efficient Semantic Labeling
Nathan Jessurun, Daniel Capecci, Olivia Dizon-Paradis, Damon Woodard, Navid Asadizanjani
Galyleo: A General-Purpose Extensible Visualization Solution
Rick McGeer, Andreas Bergen, Mahdiyar Biazi, Matt Hemmings, Robin Schreiber
USACE Coastal Engineering Toolkit and a Method of Creating a Web-Based Application
Amanda Catlett, Theresa Coumbe, Scott Christensen, Mary Byrant
Search for Extraterrestrial Intelligence: GPU Accelerated TurboSETI
Luigi Cruz, Wael Farah, Richard Elkins
Experience report of physics-informed neural networks in fluid simulations: pitfalls and frustration
Pi-Yueh Chuang, Lorena Barba
atoMEC: An open-source average-atom Python code
Timothy Callow, Daniel Kotik, Eli Kraisler, Attila Cangi
Automatic random variate generation in Python
Christoph Baumgarten, Tirth Patel
Utilizing SciPy and other open source packages to provide a powerful API for materials manipulation in the Schrödinger Materials Suite
Alexandr Fonari, Farshad Fallah, Michael Rauch
A Novel Pipeline for Cell Instance Segmentation, Tracking and Motility Classification of Toxoplasma Gondii in 3D Space
Seyed Vaezi, Gianni Orlando, Mojtaba Fazli, Gary Ward, Silvia Moreno, Shannon Quinn
The myth of the normal curve and what to do about it
Allan Campopiano
Python for Global Applications: teaching scientific Python in context to law and diplomacy students
Anna Haensch, Karin Knudson
Papyri: better documentation for the scientific ecosystem in Jupyter
Matthias Bussonnier, Camille Carvalho
Bayesian Estimation and Forecasting of Time Series in statsmodels
Chad Fulton
Python vs. the pandemic: a case study in high-stakes software development
Cliff Kerr, Robyn Stuart, Dina Mistry, Romesh Abeysuriya, Jamie Cohen, Lauren George, Michał Jastrzebski, Michael Famulare, Edward Wenger, Daniel Klein
Pylira: deconvolution of images in the presence of Poisson noise
Axel Donath, Aneta Siemiginowska, Vinay Kashyap, Douglas Burke, Karthik Solipuram, David van Dyk
Codebraid Preview for VS Code: Pandoc Markdown Preview with Jupyter Kernels
Geoffrey Poore
Incorporating Task-Agnostic Information in Task-Based Active Learning Using a Variational Autoencoder
Curtis Godwin, Meekail Zain, Nathan Safir, Bella Humphrey, Shannon Quinn
Awkward Packaging: building Scikit-HEP
Henry Schreiner, Jim Pivarski, Eduardo Rodrigues
Keeping your Jupyter notebook code quality bar high (and production ready) with Ploomber
Ido Michael
Likeness: a toolkit for connecting the social fabric of place to human dynamics
Joseph Tuccillo, James Gaboardi
poliastro: a Python library for interactive astrodynamics
Juan Rodríguez, Jorge Garrido
A New Python API for Webots Robotics Simulations
Justin Fisher
pyAudioProcessing: Audio Processing, Feature Extraction, and Machine Learning Modeling
Jyotika Singh
Phylogeography: Analysis of genetic and climatic data of SARS-CoV-2
Aleksandr Koshkarov, Wanlin Li, My-Linh Luu, Nadia Tahiri
Global optimization software library for research and education
Nadia Udler
Temporal Word Embeddings Analysis for Disease Prevention
Nathan Jacobi, Ivan Mo, Albert You, Krishi Kishore, Zane Page, Shannon Quinn, Tim Heckman
Design of a Scientific Data Analysis Support Platform
Nathan Martindale, Jason Hite, Scott Stewart, Mark Adams
The Geoscience Community Analysis Toolkit: An Open Development, Community Driven Toolkit in the Scientific Python Ecosystem
Orhan Eroglu, Anissa Zacharias, Michaela Sizemore, Alea Kootz, Heather Craker, John Clyne
popmon: Analysis Package for Dataset Shift Detection
Simon Brugman, Tomas Sostak, Pradyot Patil, Max Baak
pyDAMPF: a Python package for modeling mechanical properties of hygroscopic materials under interaction with a nanoprobe
Willy Menacho, Gonzalo Ramírez-Ávila, Horacio Guzman
Improving PyDDA’s atmospheric wind retrievals using automatic differentiation and Augmented Lagrangian methods
Robert Jackson, Rebecca Gjini, Sri Narayanan, Matt Menickelly, Paul Hovland, Jan Hückelheim, Scott Collis
RocketPy: Combining Open-Source and Scientific Libraries to Make the Space Sector More Modern and Accessible
João Soares, Mateus Junqueira, Oscar Ramirez, Patrick dos Santos Brandão, Adriano Antongiovanni, Guilherme Alves, Giovani Ceotto
Wailord: Parsers and Reproducibility for Quantum Chemistry
Rohit Goswami
Variational Autoencoders For Semi-Supervised Deep Metric Learning
Nathan Safir, Meekail Zain, Curtis Godwin, Eric Miller, Bella Humphrey, Shannon Quinn
A Python Pipeline for Rapid Application Development (RAD)
Scott Christensen, Marvin Brown, Robert Haehnel, Joshua Church, Amanda Catlett, Dallon Schofield, Quyen Brannon, Stacy Smith
Monaco: A Monte Carlo Library for Performing Uncertainty and Sensitivity Analyses
W. Shambaugh
Enabling Active Learning Pedagogy and Insight Mining with a Grammar of Model Analysis
Zachary del Rosario
Low Level Feature Extraction for Cilia Segmentation
Meekail Zain, Eric Miller, Shannon Quinn, Cecilia Lo