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Proceedings of the 20th Python in Science Conference

SciPy 2021, Austin, Texas July 12 - July 18

Accepted Papers

How PDFrw and fillable forms improves throughput at a Covid-19 Vaccine Clinic

Haw-minn Lu, José Unpingco

doi: 10.25080/majora-1b6fd038-000, pages: 1-5

Using Python for Analysis and Verification of Mixed-mode Signal Chains

Mark Thoren, Cristina Suteu

doi: 10.25080/majora-1b6fd038-001, pages: 6-13

Modernizing computing by structural biologists with Jupyter and Colab

Blaine Mooers

doi: 10.25080/majora-1b6fd038-002, pages: 14-22

signac: Data Management and Workflows for Computational Researchers

Bradley Dice, Brandon Butler, Vyas Ramasubramani, Alyssa Travitz, Michael Henry, Hardik Ojha, Kelly Wang, Carl Adorf, Eric Jankowski, Sharon Glotzer

doi: 10.25080/majora-1b6fd038-003, pages: 23-32

Accelerating Spectroscopic Data Processing Using Python and GPUs on NERSC Supercomputers

Daniel Margala, Laurie Stephey, Rollin Thomas, Stephen Bailey

doi: 10.25080/majora-1b6fd038-004, pages: 33-39

MPI-parallel Molecular Dynamics Trajectory Analysis with the H5MD Format in the MDAnalysis Python Package

Edis Jakupovic, Oliver Beckstein

doi: 10.25080/majora-1b6fd038-005, pages: 40-48

Natural Language Processing with Pandas DataFrames

Frederick Reiss, Bryan Cutler, Zachary Eichenberger

doi: 10.25080/majora-1b6fd038-006, pages: 49-57

CLAIMED, a visual and scalable component library for Trusted AI

Romeo Kienzler, Ivan Nesic

doi: 10.25080/majora-1b6fd038-007, pages: 58-64

PyCID: A Python Library for Causal Influence Diagrams

James Fox, Tom Everitt, Ryan Carey, Eric Langlois, Alessandro Abate, Michael Wooldridge

doi: 10.25080/majora-1b6fd038-008, pages: 65-73

Social Media Analysis using Natural Language Processing Techniques

Jyotika Singh

doi: 10.25080/majora-1b6fd038-009, pages: 74-80

PyBMRB: Data visualization tool for BioMagResBank

Kumaran Baskaran, Jonathan Wedell, Eldon Ulrich, Jeffery Hoch, John Markley

doi: 10.25080/majora-1b6fd038-00a, pages: 81-84

Conformal Mappings with SymPy: Towards Python-driven Analytical Modeling in Physics

Zoufiné Lauer-Baré, Erich Gaertig

doi: 10.25080/majora-1b6fd038-00b, pages: 85-93

Programmatically Identifying Cognitive Biases Present in Software Development

Amanda Kraft, Matthew Widjaja, Trevor Sands, Brad Galego

doi: 10.25080/majora-1b6fd038-00c, pages: 94-100

How PDFrw and fillable forms improves throughput at a Covid-19 Vaccine Clinic

Haw-minn Lu, José Unpingco

doi: 10.25080/majora-1b6fd038-00d, pages: 101-105

PyRSB: Portable Performance on Multithreaded Sparse BLAS Operations

Michele Martone, Simone Bacchio

doi: 10.25080/majora-1b6fd038-00e, pages: 106-114

Classification of Diffuse Subcellular Morphologies

Neelima Pulagam, Marcus Hill, Mojtaba Fazli, Rachel Mattson, Meekail Zain, Andrew Durden, Frederick Quinn, S Chennubhotla, Shannon Quinn

doi: 10.25080/majora-1b6fd038-00f, pages: 115-122

Monitoring Scientific Python Usage on a Supercomputer

Rollin Thomas, Laurie Stephey, Annette Greiner, Brandon Cook

doi: 10.25080/majora-1b6fd038-010, pages: 123-131

Training machine learning models faster with Dask

Joesph Holt, Scott Sievert

doi: 10.25080/majora-1b6fd038-011, pages: 132-139

Multithreaded parallel Python through OpenMP support in Numba

Todd Anderson, Tim Mattson

doi: 10.25080/majora-1b6fd038-012, pages: 140-147

CNN Based ToF Image Processing

Marian-Leontin Pop, Szilard Molnar, Alexandru Pop, Benjamin Kelenyi, Levente Tamas, Andrei Cozma

doi: 10.25080/majora-1b6fd038-013, pages: 148-153

Cell Tracking in 3D using deep learning segmentations

Varun Kapoor, Claudia Carabaña

doi: 10.25080/majora-1b6fd038-014, pages: 154-161